Sobic.002G156400.1

Description : ATP binding cassette subfamily B4

Gene families : OG_01_0000814 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000814_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G156400.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G156400.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_84
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_3

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006810	transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0015399	primary active transmembrane transporter activity	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0022804	active transmembrane transporter activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0042626	ATPase-coupled transmembrane transporter activity	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0055085	transmembrane transport	ISM	GOs from InterProScan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140359	ABC-type transporter activity	ISM	GOs from InterProScan
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR003439	ABC_transporter-like_ATP-bd	Pfam	1031	1180
IPR036640	ABC1_TM_sf	SUPERFAMILY	20	339
IPR017871	ABC_transporter-like_CS	ProSitePatterns	494	508
IPR017871	ABC_transporter-like_CS	ProSitePatterns	1152	1166
IPR011527	ABC1_TM_dom	Pfam	692	957
IPR011527	ABC1_TM_dom	Pfam	35	306
IPR003439	ABC_transporter-like_ATP-bd	ProSiteProfiles	355	591
IPR027417	P-loop_NTPase	Gene3D	353	625
IPR003439	ABC_transporter-like_ATP-bd	Pfam	374	522
IPR036640	ABC1_TM_sf	SUPERFAMILY	678	991
IPR027417	P-loop_NTPase	SUPERFAMILY	345	591
IPR011527	ABC1_TM_dom	ProSiteProfiles	34	320
IPR039421	Type_1_exporter	PANTHER	10	1253
IPR027417	P-loop_NTPase	Gene3D	1002	1254
IPR036640	ABC1_TM_sf	Gene3D	78	981
IPR027417	P-loop_NTPase	SUPERFAMILY	1002	1249
IPR003439	ABC_transporter-like_ATP-bd	ProSiteProfiles	1012	1249
IPR003593	AAA+_ATPase	SMART	1039	1232
IPR003593	AAA+_ATPase	SMART	382	574
IPR011527	ABC1_TM_dom	ProSiteProfiles	691	977

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.002G156400.1

Expression Profile

Co-expression Networks

Functional Annotation