Sobic.002G160700.1

Description : Transducin/WD40 repeat-like superfamily protein

Gene families : OG_01_0010278 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010278_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G160700.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G160700.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_324
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_210

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006405	RNA export from nucleus	None	Extended
BP	GO:0006406	mRNA export from nucleus	ISM	GOs from InterProScan
BP	GO:0006810	transport	None	Extended
BP	GO:0006913	nucleocytoplasmic transport	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015931	nucleobase-containing compound transport	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0050657	nucleic acid transport	None	Extended
BP	GO:0050658	RNA transport	None	Extended
BP	GO:0051028	mRNA transport	None	Extended
BP	GO:0051168	nuclear export	None	Extended
BP	GO:0051169	nuclear transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051236	establishment of RNA localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001680	WD40_rpt	Pfam	204	236
IPR001680	WD40_rpt	Pfam	79	113
IPR001680	WD40_rpt	Pfam	32	66
IPR001680	WD40_rpt	ProSiteProfiles	204	245
IPR001680	WD40_rpt	ProSiteProfiles	80	122
IPR040132	Tex1/THOC3	PANTHER	20	329
IPR001680	WD40_rpt	SMART	197	236
IPR001680	WD40_rpt	SMART	153	194
IPR001680	WD40_rpt	SMART	239	278
IPR001680	WD40_rpt	SMART	73	113
IPR001680	WD40_rpt	SMART	27	66
IPR001680	WD40_rpt	SMART	281	327
IPR001680	WD40_rpt	ProSiteProfiles	34	68
IPR024977	Apc4-like_WD40_dom	Pfam	247	300
IPR019775	WD40_repeat_CS	ProSitePatterns	100	114
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	14	192
IPR036322	WD40_repeat_dom_sf	SUPERFAMILY	31	313
IPR015943	WD40/YVTN_repeat-like_dom_sf	Gene3D	193	331
IPR020472	G-protein_beta_WD-40_rep	PRINTS	100	114
IPR020472	G-protein_beta_WD-40_rep	PRINTS	53	67
IPR020472	G-protein_beta_WD-40_rep	PRINTS	223	237

No CAZYmes available for this sequence

External Links

No external refs found!