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  5. Sobic.002G178800.2

Sobic.002G178800.2


Description : Ubiquitin supergroup;Ribosomal protein L40e


Gene families : OG_01_0000003 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000003_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G178800.2
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G178800.2 No neighbors in network
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_79


Type GO Term Name Evidence Source
MF GO:0003735 structural constituent of ribosome ISM GOs from InterProScan
MF GO:0005515 protein binding ISM GOs from InterProScan
CC GO:0005840 ribosome ISM GOs from InterProScan
BP GO:0006412 translation ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001975 Ribosomal_eL40_dom Pfam 86 128
IPR000626 Ubiquitin-like_dom ProSiteProfiles 1 76
IPR011332 Ribosomal_zn-bd SUPERFAMILY 84 127
IPR000626 Ubiquitin-like_dom SMART 1 72
IPR038587 Ribosomal_eL40_sf Gene3D 89 130
IPR000626 Ubiquitin-like_dom Pfam 3 74
IPR029071 Ubiquitin-like_domsf SUPERFAMILY 1 77
IPR019954 Ubiquitin_CS ProSitePatterns 27 52
IPR019956 Ubiquitin_dom PRINTS 32 52
IPR019956 Ubiquitin_dom PRINTS 53 74
IPR019956 Ubiquitin_dom PRINTS 11 31
IPR001975 Ribosomal_eL40_dom SMART 85 136

No CAZYmes available for this sequence

No external refs found!