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  5. Sobic.002G181000.1

Sobic.002G181000.1


Description : CRS1 / YhbY (CRM) domain-containing protein


Gene families : OG_01_0004458 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004458_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G181000.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G181000.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_2
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_307


Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
MF GO:0003729 mRNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001890 RNA-binding_CRM ProSiteProfiles 351 447
IPR035920 YhbY-like_sf Gene3D 550 647
IPR035920 YhbY-like_sf Gene3D 353 449
IPR001890 RNA-binding_CRM ProSiteProfiles 549 646
IPR035920 YhbY-like_sf Gene3D 764 865
IPR001890 RNA-binding_CRM SMART 764 851
IPR001890 RNA-binding_CRM SMART 353 436
IPR001890 RNA-binding_CRM SMART 551 635
IPR035920 YhbY-like_sf SUPERFAMILY 353 441
IPR035920 YhbY-like_sf SUPERFAMILY 763 861
IPR035920 YhbY-like_sf SUPERFAMILY 550 643
IPR001890 RNA-binding_CRM ProSiteProfiles 762 862
IPR001890 RNA-binding_CRM Pfam 765 851
IPR001890 RNA-binding_CRM Pfam 354 436
IPR001890 RNA-binding_CRM Pfam 551 635
IPR045278 CRS1/CFM2/CFM3 PANTHER 35 953

No CAZYmes available for this sequence

No external refs found!