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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0010265 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010265_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G181132.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G181132.1 | No neighbors in network |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_2 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 282 | 314 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 457 | 490 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 423 | 455 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 247 | 279 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 212 | 243 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 318 | 350 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 353 | 382 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 105 | 138 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 11 | 154 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 396 | 518 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 155 | 258 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 209 | 243 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 103 | 137 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 259 | 386 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 420 | 454 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 104 | 147 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 209 | 256 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 419 | 468 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 317 | 361 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 279 | 314 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 315 | 349 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 180 | 206 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 282 | 312 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 244 | 278 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 455 | 489 |
No CAZYmes available for this sequence
| No external refs found! |