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  5. Sobic.002G183700.1

Sobic.002G183700.1


Description : Cupredoxin superfamily protein


Gene families : OG_01_0001614 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001614_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G183700.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G183700.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_173
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_46


Type GO Term Name Evidence Source
MF GO:0005507 copper ion binding ISM GOs from InterProScan
CC GO:0005576 extracellular region ISM GOs from InterProScan
MF GO:0016491 oxidoreductase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011706 Cu-oxidase_C Pfam 427 550
IPR002355 Cu_oxidase_Cu_BS ProSitePatterns 532 543
IPR045087 Cu-oxidase_fam PANTHER 5 567
IPR008972 Cupredoxin SUPERFAMILY 364 565
IPR034267 CuRO_3_AAO CDD 367 558
IPR001117 Cu-oxidase_2nd Pfam 161 321
IPR008972 Cupredoxin Gene3D 155 356
IPR008972 Cupredoxin SUPERFAMILY 154 354
IPR033138 Cu_oxidase_CS ProSitePatterns 527 547
IPR008972 Cupredoxin SUPERFAMILY 13 172
IPR008972 Cupredoxin Gene3D 361 569
IPR008972 Cupredoxin Gene3D 14 145
IPR017760 L-ascorbate_oxidase_pln TIGRFAM 26 567
IPR011707 Cu-oxidase-like_N Pfam 36 145
HMM Family HMM Length Query Length e-Value Query Start Query End
AA1 358 572 7.8e-119 42 543
No external refs found!