Sobic.002G197300.1

Description : MUTS homolog 6

Gene families : OG_01_0003340 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003340_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G197300.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G197300.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_190
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_80

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	None	Extended
MF	GO:0003690	double-stranded DNA binding	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006259	DNA metabolic process	None	Extended
BP	GO:0006281	DNA repair	None	Extended
BP	GO:0006298	mismatch repair	ISM	GOs from InterProScan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0006950	response to stress	None	Extended
BP	GO:0006974	DNA damage response	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0030983	mismatched DNA binding	ISM	GOs from InterProScan
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033554	cellular response to stress	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0050896	response to stimulus	None	Extended
BP	GO:0051716	cellular response to stimulus	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000432	DNA_mismatch_repair_MutS_C	ProSitePatterns	1127	1143
IPR027417	P-loop_NTPase	SUPERFAMILY	1009	1240
IPR027417	P-loop_NTPase	Gene3D	997	1270
IPR016151	DNA_mismatch_repair_MutS_N	Gene3D	316	475
IPR007696	DNA_mismatch_repair_MutS_core	SMART	687	1026
IPR036678	MutS_con_dom_sf	Gene3D	482	667
IPR000432	DNA_mismatch_repair_MutS_C	Pfam	1049	1239
IPR036678	MutS_con_dom_sf	SUPERFAMILY	474	683
IPR036187	DNA_mismatch_repair_MutS_sf	SUPERFAMILY	670	989
IPR016151	DNA_mismatch_repair_MutS_N	SUPERFAMILY	346	469
IPR007695	DNA_mismatch_repair_MutS-lik_N	Pfam	358	473
IPR045076	MutS_family	PANTHER	325	1261
IPR007861	DNA_mismatch_repair_MutS_clamp	Pfam	855	945
IPR002999	Tudor	SMART	96	154
IPR007860	DNA_mmatch_repair_MutS_con_dom	Pfam	484	642
IPR017261	DNA_mismatch_repair_MutS/MSH	PIRSF	7	1303
IPR000432	DNA_mismatch_repair_MutS_C	SMART	1046	1237
IPR007696	DNA_mismatch_repair_MutS_core	Pfam	673	986

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.002G197300.1

Expression Profile

Co-expression Networks

Functional Annotation