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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0019643 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0019643_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G198900.1 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G198900.1 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_125 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_134 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 352 | 386 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 247 | 281 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 459 | 493 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 249 | 283 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 284 | 317 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 424 | 458 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 179 | 213 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 320 | 353 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 390 | 423 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 214 | 247 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 145 | 178 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 457 | 491 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 278 | 309 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 111 | 204 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 212 | 246 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 524 | 620 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 276 | 373 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 177 | 211 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 387 | 421 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 317 | 351 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 142 | 176 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 450 | 523 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 205 | 275 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 374 | 449 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 282 | 316 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 422 | 456 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 387 | 434 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 456 | 505 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 316 | 365 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 145 | 188 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 211 | 260 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 543 | 591 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 579 | 613 |
No CAZYmes available for this sequence
| No external refs found! |