Sobic.002G202400.1

Description : Polynucleotidyl transferase, ribonuclease H-like superfamily protein

Gene families : OG_01_0013850 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013850_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G202400.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G202400.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_182
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_173

Type	GO Term	Name	Evidence	Source
MF	GO:0000175	3'-5'-RNA exonuclease activity	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004518	nuclease activity	None	Extended
MF	GO:0004527	exonuclease activity	None	Extended
MF	GO:0004532	RNA exonuclease activity	None	Extended
MF	GO:0004535	poly(A)-specific ribonuclease activity	ISM	GOs from InterProScan
MF	GO:0004540	RNA nuclease activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0008408	3'-5' exonuclease activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016788	hydrolase activity, acting on ester bonds	None	Extended
MF	GO:0016796	exonuclease activity, active with either ribo- or deoxyribonucleic acids and producing 5'-phosphomonoesters	None	Extended
MF	GO:0016896	RNA exonuclease activity, producing 5'-phosphomonoesters	None	Extended
CC	GO:0030014	CCR4-NOT complex	ISM	GOs from InterProScan
CC	GO:0032991	protein-containing complex	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0140098	catalytic activity, acting on RNA	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR006941	RNase_CAF1	Pfam	17	138
IPR006941	RNase_CAF1	Pfam	162	223
IPR039637	CNOT7/CNOT8/Pop2	PANTHER	1	279
IPR036397	RNaseH_sf	Gene3D	1	271
IPR012337	RNaseH-like_sf	SUPERFAMILY	14	268

No CAZYmes available for this sequence

External Links

No external refs found!