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  5. Sobic.002G203800.1

Sobic.002G203800.1


Description : pleiotropic drug resistance 12


Gene families : OG_01_0000008 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000008_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G203800.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G203800.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_178
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_36


Type GO Term Name Evidence Source
MF GO:0005524 ATP binding ISM GOs from InterProScan
CC GO:0016020 membrane ISM GOs from InterProScan
MF GO:0140359 ABC-type transporter activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR034001 ABCG_PDR_1 CDD 172 423
IPR034003 ABCG_PDR_2 CDD 861 1099
IPR013525 ABC2_TM Pfam 1189 1403
IPR013525 ABC2_TM Pfam 520 731
IPR027417 P-loop_NTPase Gene3D 172 470
IPR003439 ABC_transporter-like_ATP-bd ProSiteProfiles 864 1117
IPR029481 ABC_trans_N Pfam 109 158
IPR003439 ABC_transporter-like_ATP-bd ProSiteProfiles 168 441
IPR027417 P-loop_NTPase SUPERFAMILY 180 441
IPR003439 ABC_transporter-like_ATP-bd Pfam 892 1044
IPR027417 P-loop_NTPase Gene3D 878 1108
IPR013581 PDR_assoc Pfam 737 801
IPR003593 AAA+_ATPase SMART 901 1093
IPR003593 AAA+_ATPase SMART 193 418
IPR003439 ABC_transporter-like_ATP-bd Pfam 184 366
IPR043926 ABCG_dom Pfam 399 490
IPR027417 P-loop_NTPase SUPERFAMILY 887 1100

No CAZYmes available for this sequence

No external refs found!