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  5. Sobic.002G217200.1

Sobic.002G217200.1


Description : Cysteine proteinases superfamily protein


Gene families : OG_01_0008967 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008967_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G217200.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G217200.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_163
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_242


Type GO Term Name Evidence Source
BP GO:0006508 proteolysis ISM GOs from InterProScan
MF GO:0008234 cysteine-type peptidase activity ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR013201 Prot_inhib_I29 SMART 62 118
IPR000169 Pept_cys_AS ProSitePatterns 164 175
IPR013201 Prot_inhib_I29 Pfam 62 118
IPR000668 Peptidase_C1A_C Pfam 146 361
IPR025661 Pept_asp_AS ProSitePatterns 325 344
IPR000668 Peptidase_C1A_C SMART 146 361
IPR000668 Peptidase_C1A_C PRINTS 310 320
IPR000668 Peptidase_C1A_C PRINTS 164 179
IPR000668 Peptidase_C1A_C PRINTS 325 331
IPR038765 Papain-like_cys_pep_sf SUPERFAMILY 59 361
IPR039417 Peptidase_C1A_papain-like CDD 147 360
IPR025660 Pept_his_AS ProSitePatterns 308 318

No CAZYmes available for this sequence

No external refs found!