Sobic.002G250400.1

Description : hydroxy methylglutaryl CoA reductase 1

Gene families : OG_01_0001689 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001689_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G250400.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G250400.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_151
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_215

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004420	hydroxymethylglutaryl-CoA reductase (NADPH) activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006163	purine nucleotide metabolic process	None	Extended
BP	GO:0006629	lipid metabolic process	None	Extended
BP	GO:0006720	isoprenoid metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006753	nucleoside phosphate metabolic process	None	Extended
BP	GO:0006793	phosphorus metabolic process	None	Extended
BP	GO:0006796	phosphate-containing compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008299	isoprenoid biosynthetic process	ISM	GOs from InterProScan
BP	GO:0008610	lipid biosynthetic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009117	nucleotide metabolic process	None	Extended
BP	GO:0009150	purine ribonucleotide metabolic process	None	Extended
BP	GO:0009259	ribonucleotide metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015936	coenzyme A metabolic process	ISM	GOs from InterProScan
MF	GO:0016491	oxidoreductase activity	None	Extended
MF	GO:0016614	oxidoreductase activity, acting on CH-OH group of donors	None	Extended
MF	GO:0016616	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	ISM	GOs from InterProScan
BP	GO:0019637	organophosphate metabolic process	None	Extended
BP	GO:0019693	ribose phosphate metabolic process	None	Extended
BP	GO:0033865	nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0033875	ribonucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034032	purine nucleoside bisphosphate metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044255	cellular lipid metabolic process	None	Extended
BP	GO:0044281	small molecule metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0055086	nucleobase-containing small molecule metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0072521	purine-containing compound metabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR023076	HMG_CoA_Rdtase_CS	ProSitePatterns	494	501
IPR009023	HMG_CoA_Rdtase_NAD(P)-bd_sf	SUPERFAMILY	280	396
IPR002202	HMG_CoA_Rdtase	ProSiteProfiles	159	563
IPR023076	HMG_CoA_Rdtase_CS	ProSitePatterns	339	353
IPR002202	HMG_CoA_Rdtase	PANTHER	2	572
IPR009029	HMG_CoA_Rdtase_sub-bd_dom_sf	SUPERFAMILY	156	553
IPR009023	HMG_CoA_Rdtase_NAD(P)-bd_sf	Gene3D	280	396
IPR004554	HMG_CoA_Rdtase_eu_arc	TIGRFAM	159	563
IPR004554	HMG_CoA_Rdtase_eu_arc	CDD	160	563
IPR023074	HMG_CoA_Rdtase_cat_sf	Gene3D	230	549
IPR023282	HMG_CoA_Rdtase_N	Gene3D	155	229
IPR002202	HMG_CoA_Rdtase	PRINTS	377	402
IPR002202	HMG_CoA_Rdtase	PRINTS	482	503
IPR002202	HMG_CoA_Rdtase	PRINTS	246	266
IPR002202	HMG_CoA_Rdtase	PRINTS	219	240
IPR002202	HMG_CoA_Rdtase	PRINTS	428	454
IPR002202	HMG_CoA_Rdtase	PRINTS	337	355
IPR002202	HMG_CoA_Rdtase	Pfam	188	563

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.002G250400.1

Expression Profile

Co-expression Networks

Functional Annotation