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  5. Sobic.002G264200.2

Sobic.002G264200.2


Description : RNA binding


Gene families : OG_01_0001992 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001992_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G264200.2
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G264200.2
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_146
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_116


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 37 118
IPR035979 RBD_domain_sf SUPERFAMILY 121 221
IPR000504 RRM_dom ProSiteProfiles 238 312
IPR000504 RRM_dom SMART 45 113
IPR000504 RRM_dom SMART 123 190
IPR000504 RRM_dom SMART 239 308
IPR000504 RRM_dom Pfam 124 187
IPR000504 RRM_dom Pfam 46 109
IPR000504 RRM_dom Pfam 251 305
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 119 229
IPR012921 SPOC_C Pfam 442 556
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 230 320
IPR035979 RBD_domain_sf SUPERFAMILY 233 315
IPR000504 RRM_dom ProSiteProfiles 122 194
IPR000504 RRM_dom ProSiteProfiles 44 117
IPR035979 RBD_domain_sf SUPERFAMILY 40 118

No CAZYmes available for this sequence

No external refs found!