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  5. Sobic.002G280700.1

Sobic.002G280700.1


Description : Transducin family protein / WD-40 repeat family protein


Gene families : OG_01_0013466 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0013466_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G280700.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G280700.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_127
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_16


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 116 391
IPR001680 WD40_rpt ProSiteProfiles 211 253
IPR020472 G-protein_beta_WD-40_rep PRINTS 182 196
IPR020472 G-protein_beta_WD-40_rep PRINTS 318 332
IPR020472 G-protein_beta_WD-40_rep PRINTS 274 288
IPR001680 WD40_rpt ProSiteProfiles 298 333
IPR019775 WD40_repeat_CS ProSitePatterns 182 196
IPR001680 WD40_rpt Pfam 294 331
IPR001680 WD40_rpt Pfam 352 387
IPR001680 WD40_rpt Pfam 250 287
IPR001680 WD40_rpt Pfam 181 195
IPR019775 WD40_repeat_CS ProSitePatterns 318 332
IPR001680 WD40_rpt ProSiteProfiles 162 204
IPR001680 WD40_rpt ProSiteProfiles 355 389
IPR019775 WD40_repeat_CS ProSitePatterns 375 389
IPR001680 WD40_rpt ProSiteProfiles 254 289
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 13 401
IPR001680 WD40_rpt SMART 247 287
IPR001680 WD40_rpt SMART 348 388
IPR001680 WD40_rpt SMART 291 331
IPR001680 WD40_rpt SMART 155 195
IPR001680 WD40_rpt SMART 204 244
IPR022052 Histone-bd_RBBP4_N Pfam 23 87

No CAZYmes available for this sequence

No external refs found!