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  5. Sobic.002G286800.1

Sobic.002G286800.1


Description : MATE efflux family protein


Gene families : OG_01_0008070 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008070_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G286800.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G286800.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_223
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_99


Type GO Term Name Evidence Source
MF GO:0015297 antiporter activity ISM GOs from InterProScan
CC GO:0016020 membrane ISM GOs from InterProScan
MF GO:0042910 xenobiotic transmembrane transporter activity ISM GOs from InterProScan
BP GO:0055085 transmembrane transport ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002528 MATE_fam TIGRFAM 137 541
IPR044644 DinF-like CDD 129 561
IPR002528 MATE_fam Pfam 224 311
IPR002528 MATE_fam Pfam 381 517
IPR044644 DinF-like PANTHER 121 573

No CAZYmes available for this sequence

No external refs found!