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  5. Sobic.002G290300.1

Sobic.002G290300.1


Description : TBP-associated factor 15


Gene families : OG_01_0007253 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007253_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G290300.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G290300.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_150
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_232


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000504 RRM_dom Pfam 14 91
IPR001876 Znf_RanBP2 ProSitePatterns 146 167
IPR001876 Znf_RanBP2 Pfam 217 243
IPR001876 Znf_RanBP2 Pfam 143 172
IPR035979 RBD_domain_sf SUPERFAMILY 5 102
IPR036443 Znf_RanBP2_sf SUPERFAMILY 135 174
IPR001876 Znf_RanBP2 ProSiteProfiles 142 173
IPR001876 Znf_RanBP2 ProSiteProfiles 214 243
IPR000504 RRM_dom ProSiteProfiles 12 98
IPR036443 Znf_RanBP2_sf SUPERFAMILY 207 244
IPR001876 Znf_RanBP2 SMART 144 170
IPR001876 Znf_RanBP2 SMART 216 240
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 11 94
IPR001876 Znf_RanBP2 ProSitePatterns 218 237
IPR000504 RRM_dom SMART 13 94

No CAZYmes available for this sequence

No external refs found!