Sobic.002G313400.1

Description : RNA helicase family protein

Gene families : OG_01_0005662 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005662_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G313400.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G313400.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_252
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_201

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004386	helicase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001650	Helicase_C	SMART	818	922
IPR027417	P-loop_NTPase	Gene3D	539	763
IPR007502	Helicase-assoc_dom	Pfam	986	1071
IPR001650	Helicase_C	ProSiteProfiles	783	963
IPR007502	Helicase-assoc_dom	SMART	983	1073
IPR014001	Helicase_ATP-bd	ProSiteProfiles	598	761
IPR001650	Helicase_C	Pfam	793	922
IPR014001	Helicase_ATP-bd	SMART	586	770
IPR027417	P-loop_NTPase	SUPERFAMILY	579	1204
IPR011709	DEAD-box_helicase_OB_fold	Pfam	1130	1207
IPR027417	P-loop_NTPase	Gene3D	764	942
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	598	748

No CAZYmes available for this sequence

External Links

No external refs found!