Sobic.002G314800.1

Description : SKU5 similar 5

Gene families : OG_01_0002715 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002715_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G314800.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G314800.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_54
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_46

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005507	copper ion binding	ISM	GOs from InterProScan
MF	GO:0016491	oxidoreductase activity	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR008972	Cupredoxin	Gene3D	350	544
IPR034273	CuRO_1_AAO-like	CDD	35	150
IPR001117	Cu-oxidase_2nd	Pfam	166	302
IPR045087	Cu-oxidase_fam	PANTHER	22	541
IPR008972	Cupredoxin	SUPERFAMILY	350	539
IPR011706	Cu-oxidase_C	Pfam	413	520
IPR008972	Cupredoxin	SUPERFAMILY	160	340
IPR011707	Cu-oxidase-like_N	Pfam	40	153
IPR008972	Cupredoxin	Gene3D	33	155
IPR008972	Cupredoxin	SUPERFAMILY	30	180
IPR008972	Cupredoxin	Gene3D	164	338

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
AA1	358	549	3e-67	50	501

External Links

No external refs found!