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  5. Sobic.002G318600.1

Sobic.002G318600.1


Description : RNA-binding (RRM/RBD/RNP motifs) family protein


Gene families : OG_01_0006375 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006375_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G318600.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G318600.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_223
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_94


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0003723 RNA binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000504 RRM_dom SMART 116 191
IPR000504 RRM_dom SMART 211 285
IPR000504 RRM_dom SMART 321 388
IPR000504 RRM_dom ProSiteProfiles 210 289
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 114 193
IPR035979 RBD_domain_sf SUPERFAMILY 209 393
IPR000504 RRM_dom Pfam 117 185
IPR000504 RRM_dom Pfam 322 385
IPR000504 RRM_dom Pfam 212 283
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 300 426
IPR000504 RRM_dom ProSiteProfiles 115 197
IPR000504 RRM_dom ProSiteProfiles 320 392
IPR035979 RBD_domain_sf SUPERFAMILY 79 186
IPR012677 Nucleotide-bd_a/b_plait_sf Gene3D 194 299

No CAZYmes available for this sequence

No external refs found!