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  5. Sobic.002G327900.1

Sobic.002G327900.1


Description : O-Glycosyl hydrolases family 17 protein


Gene families : OG_01_0001548 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0001548_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G327900.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G327900.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_45
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_23


Type GO Term Name Evidence Source
MF GO:0004553 hydrolase activity, hydrolyzing O-glycosyl compounds ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR044965 Glyco_hydro_17_plant PANTHER 471 551
IPR044965 Glyco_hydro_17_plant PANTHER 383 465
IPR017853 Glycoside_hydrolase_SF SUPERFAMILY 33 370
IPR000490 Glyco_hydro_17 Pfam 33 370
IPR044965 Glyco_hydro_17_plant PANTHER 9 375
IPR012946 X8 SMART 383 466
IPR012946 X8 SMART 469 552
IPR012946 X8 Pfam 470 540
IPR012946 X8 Pfam 384 453
HMM Family HMM Length Query Length e-Value Query Start Query End
CBM43 83 568 1.2e-29 384 464
GH17 311 568 3.4e-103 33 370
No external refs found!