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  5. Sobic.002G367800.1

Sobic.002G367800.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0005852 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005852_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G367800.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G367800.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_310
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_40


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 360 394
IPR002885 Pentatricopeptide_rpt TIGRFAM 291 324
IPR002885 Pentatricopeptide_rpt TIGRFAM 363 395
IPR002885 Pentatricopeptide_rpt TIGRFAM 214 245
IPR002885 Pentatricopeptide_rpt Pfam 205 256
IPR002885 Pentatricopeptide_rpt Pfam 367 391
IPR011990 TPR-like_helical_dom_sf Gene3D 131 262
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 211 245
IPR011990 TPR-like_helical_dom_sf Gene3D 263 354
IPR011990 TPR-like_helical_dom_sf Gene3D 355 482
IPR002885 Pentatricopeptide_rpt Pfam 288 334
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 288 322

No CAZYmes available for this sequence

No external refs found!