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  5. Sobic.002G380100.1

Sobic.002G380100.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0011422 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0011422_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G380100.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G380100.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_106
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_37


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt Pfam 558 599
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 160 194
IPR002885 Pentatricopeptide_rpt Pfam 338 360
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 90 124
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 125 159
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 55 89
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 230 264
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 466 500
IPR002885 Pentatricopeptide_rpt Pfam 295 328
IPR002885 Pentatricopeptide_rpt Pfam 17 47
IPR002885 Pentatricopeptide_rpt Pfam 462 492
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 20 54
IPR002885 Pentatricopeptide_rpt TIGRFAM 398 431
IPR002885 Pentatricopeptide_rpt TIGRFAM 58 91
IPR002885 Pentatricopeptide_rpt TIGRFAM 128 161
IPR002885 Pentatricopeptide_rpt TIGRFAM 468 502
IPR002885 Pentatricopeptide_rpt TIGRFAM 162 192
IPR002885 Pentatricopeptide_rpt TIGRFAM 302 335
IPR002885 Pentatricopeptide_rpt TIGRFAM 92 125
IPR002885 Pentatricopeptide_rpt TIGRFAM 198 231
IPR002885 Pentatricopeptide_rpt TIGRFAM 433 466
IPR002885 Pentatricopeptide_rpt TIGRFAM 23 55
IPR002885 Pentatricopeptide_rpt TIGRFAM 503 537
IPR002885 Pentatricopeptide_rpt TIGRFAM 538 571
IPR002885 Pentatricopeptide_rpt TIGRFAM 232 265
IPR011990 TPR-like_helical_dom_sf Gene3D 484 631
IPR011990 TPR-like_helical_dom_sf Gene3D 257 383
IPR002885 Pentatricopeptide_rpt Pfam 500 549
IPR002885 Pentatricopeptide_rpt Pfam 55 103
IPR002885 Pentatricopeptide_rpt Pfam 126 173
IPR002885 Pentatricopeptide_rpt Pfam 194 243
IPR002885 Pentatricopeptide_rpt Pfam 399 442
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 431 465
IPR011990 TPR-like_helical_dom_sf Gene3D 103 256
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 501 535
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 396 430
IPR011990 TPR-like_helical_dom_sf Gene3D 1 102
IPR011990 TPR-like_helical_dom_sf Gene3D 384 483
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 536 570
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 571 605
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 335 369
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 195 229
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 300 334

No CAZYmes available for this sequence

No external refs found!