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  5. Sobic.002G384800.1

Sobic.002G384800.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0014654 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014654_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G384800.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G384800.1 No neighbors in network
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_339


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 160 194
IPR011990 TPR-like_helical_dom_sf Gene3D 307 423
IPR002885 Pentatricopeptide_rpt TIGRFAM 162 188
IPR002885 Pentatricopeptide_rpt TIGRFAM 359 391
IPR002885 Pentatricopeptide_rpt TIGRFAM 257 290
IPR002885 Pentatricopeptide_rpt Pfam 140 159
IPR002885 Pentatricopeptide_rpt Pfam 359 388
IPR002885 Pentatricopeptide_rpt Pfam 330 356
IPR002885 Pentatricopeptide_rpt Pfam 393 421
IPR002885 Pentatricopeptide_rpt Pfam 430 453
IPR002885 Pentatricopeptide_rpt Pfam 162 192
IPR011990 TPR-like_helical_dom_sf Gene3D 210 306
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 255 289
IPR002885 Pentatricopeptide_rpt Pfam 255 301
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 356 390
IPR011990 TPR-like_helical_dom_sf Gene3D 50 209

No CAZYmes available for this sequence

No external refs found!