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  5. Sobic.002G385200.1

Sobic.002G385200.1


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0014654 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0014654_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G385200.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G385200.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_161
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_40


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011990 TPR-like_helical_dom_sf Gene3D 221 344
IPR011990 TPR-like_helical_dom_sf Gene3D 69 220
IPR011990 TPR-like_helical_dom_sf Gene3D 345 549
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 369 403
IPR002885 Pentatricopeptide_rpt Pfam 268 314
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 173 207
IPR002885 Pentatricopeptide_rpt TIGRFAM 270 303
IPR002885 Pentatricopeptide_rpt TIGRFAM 372 404
IPR002885 Pentatricopeptide_rpt TIGRFAM 175 201
IPR002885 Pentatricopeptide_rpt Pfam 153 172
IPR002885 Pentatricopeptide_rpt Pfam 175 205
IPR002885 Pentatricopeptide_rpt Pfam 372 399
IPR002885 Pentatricopeptide_rpt Pfam 443 466
IPR002885 Pentatricopeptide_rpt Pfam 406 434
IPR002885 Pentatricopeptide_rpt Pfam 343 369
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 268 302

No CAZYmes available for this sequence

No external refs found!