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  5. Sobic.002G390200.2

Sobic.002G390200.2


Description : Pentatricopeptide repeat (PPR) superfamily protein


Gene families : OG_01_0010994 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010994_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G390200.2
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G390200.2 No neighbors in network
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_127


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR032867 DYW_dom Pfam 476 599
IPR002885 Pentatricopeptide_rpt TIGRFAM 378 402
IPR002885 Pentatricopeptide_rpt TIGRFAM 173 202
IPR002885 Pentatricopeptide_rpt TIGRFAM 143 173
IPR002885 Pentatricopeptide_rpt TIGRFAM 204 238
IPR002885 Pentatricopeptide_rpt TIGRFAM 306 339
IPR011990 TPR-like_helical_dom_sf Gene3D 65 171
IPR011990 TPR-like_helical_dom_sf Gene3D 172 255
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 202 236
IPR002885 Pentatricopeptide_rpt Pfam 144 171
IPR002885 Pentatricopeptide_rpt Pfam 377 401
IPR002885 Pentatricopeptide_rpt Pfam 114 139
IPR002885 Pentatricopeptide_rpt Pfam 204 231
IPR002885 Pentatricopeptide_rpt Pfam 173 201
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 140 174
IPR002885 Pentatricopeptide_rpt Pfam 302 346
IPR011990 TPR-like_helical_dom_sf Gene3D 256 368
IPR011990 TPR-like_helical_dom_sf Gene3D 369 545
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 303 337

No CAZYmes available for this sequence

No external refs found!