Sobic.002G394200.1

Description : DNA/RNA helicase protein

Gene families : OG_01_0007091 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007091_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G394200.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G394200.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_223
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_173

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0008094	ATP-dependent activity, acting on DNA	None	Extended
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:0140097	catalytic activity, acting on DNA	None	Extended
MF	GO:0140640	catalytic activity, acting on a nucleic acid	None	Extended
MF	GO:0140657	ATP-dependent activity	None	Extended
MF	GO:0140658	ATP-dependent chromatin remodeler activity	ISM	GOs from InterProScan
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR014905	HIRAN	Pfam	24	119
IPR027417	P-loop_NTPase	SUPERFAMILY	187	459
IPR014001	Helicase_ATP-bd	ProSiteProfiles	238	421
IPR038718	SNF2-like_sf	Gene3D	230	460
IPR001841	Znf_RING	ProSiteProfiles	575	614
IPR014905	HIRAN	SMART	23	120
IPR027417	P-loop_NTPase	SUPERFAMILY	471	821
IPR001650	Helicase_C	SMART	679	764
IPR014001	Helicase_ATP-bd	SMART	192	433
IPR017907	Znf_RING_CS	ProSitePatterns	590	599
IPR001841	Znf_RING	SMART	575	613
IPR013083	Znf_RING/FYVE/PHD	Gene3D	560	624
IPR027417	P-loop_NTPase	Gene3D	474	822
IPR001650	Helicase_C	ProSiteProfiles	648	816
IPR001650	Helicase_C	Pfam	648	764
IPR000330	SNF2_N	Pfam	199	535

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.002G394200.1

Expression Profile

Co-expression Networks

Functional Annotation