Sobic.002G396000.1

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_01_0006952 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0006952_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G396000.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G396000.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_148
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_205

Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	None	Extended
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	None	Extended
BP	GO:0000398	mRNA splicing, via spliceosome	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	ISM	GOs from InterProScan
BP	GO:0006397	mRNA processing	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0008380	RNA splicing	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0016071	mRNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	399	502
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	520	682
IPR003107	HAT	SMART	615	649
IPR003107	HAT	SMART	106	138
IPR003107	HAT	SMART	287	322
IPR003107	HAT	SMART	542	574
IPR003107	HAT	SMART	450	486
IPR003107	HAT	SMART	64	96
IPR003107	HAT	SMART	140	174
IPR003107	HAT	SMART	576	610
IPR003107	HAT	SMART	687	722
IPR003107	HAT	SMART	724	757
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	110	242
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	689	770
IPR011990	TPR-like_helical_dom_sf	Gene3D	514	686
IPR011990	TPR-like_helical_dom_sf	Gene3D	227	353
IPR011990	TPR-like_helical_dom_sf	Gene3D	361	513
IPR011990	TPR-like_helical_dom_sf	Gene3D	706	770
IPR011990	TPR-like_helical_dom_sf	Gene3D	40	209
IPR011990	TPR-like_helical_dom_sf	SUPERFAMILY	41	97
IPR002885	Pentatricopeptide_rpt	Pfam	276	298
IPR045075	Syf1-like	PANTHER	32	871

No CAZYmes available for this sequence

External Links

No external refs found!