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  5. Sobic.002G396050.1

Sobic.002G396050.1


Description : phragmoplastin interacting protein 1


Gene families : OG_01_0000251 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000251_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G396050.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G396050.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_63
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_36


Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding ISM GOs from InterProScan
MF GO:0008270 zinc ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001878 Znf_CCHC ProSiteProfiles 415 430
IPR001878 Znf_CCHC Pfam 570 585
IPR001878 Znf_CCHC Pfam 522 538
IPR036875 Znf_CCHC_sf SUPERFAMILY 552 588
IPR001878 Znf_CCHC ProSiteProfiles 523 538
IPR001878 Znf_CCHC ProSiteProfiles 571 585
IPR036875 Znf_CCHC_sf SUPERFAMILY 407 465
IPR036875 Znf_CCHC_sf SUPERFAMILY 504 546
IPR001878 Znf_CCHC SMART 523 539
IPR001878 Znf_CCHC SMART 570 586
IPR001878 Znf_CCHC SMART 447 463
IPR001878 Znf_CCHC SMART 414 430

No CAZYmes available for this sequence

No external refs found!