Sobic.002G405100.2

Description : elongation factor Ts family protein

Gene families : OG_01_0007515 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007515_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G405100.2
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G405100.2
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_68
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_201

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0003746	translation elongation factor activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006414	translational elongation	ISM	GOs from InterProScan
MF	GO:0008135	translation factor activity, RNA binding	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
MF	GO:0045182	translation regulator activity	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0090079	translation regulator activity, nucleic acid binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001816	Transl_elong_EFTs/EF1B	TIGRFAM	741	841
IPR001816	Transl_elong_EFTs/EF1B	TIGRFAM	588	712
IPR001816	Transl_elong_EFTs/EF1B	TIGRFAM	500	594
IPR036402	EF-Ts_dimer_sf	SUPERFAMILY	795	936
IPR014039	Transl_elong_EFTs/EF1B_dimer	Pfam	551	695
IPR014039	Transl_elong_EFTs/EF1B_dimer	Pfam	795	936
IPR018101	Transl_elong_Ts_CS	ProSitePatterns	750	765
IPR001816	Transl_elong_EFTs/EF1B	Hamap	741	937
IPR012340	NA-bd_OB-fold	SUPERFAMILY	134	214
IPR018101	Transl_elong_Ts_CS	ProSitePatterns	509	524
IPR009060	UBA-like_sf	SUPERFAMILY	742	793
IPR001816	Transl_elong_EFTs/EF1B	Hamap	499	712
IPR018101	Transl_elong_Ts_CS	ProSitePatterns	573	583
IPR018101	Transl_elong_Ts_CS	ProSitePatterns	814	824
IPR036402	EF-Ts_dimer_sf	Gene3D	798	935
IPR003029	S1_domain	Pfam	144	213
IPR009060	UBA-like_sf	SUPERFAMILY	501	552
IPR012340	NA-bd_OB-fold	SUPERFAMILY	254	334
IPR003029	S1_domain	ProSiteProfiles	144	213
IPR001816	Transl_elong_EFTs/EF1B	PANTHER	247	716
IPR036402	EF-Ts_dimer_sf	Gene3D	557	694
IPR001816	Transl_elong_EFTs/EF1B	PANTHER	741	936
IPR003029	S1_domain	ProSiteProfiles	259	327
IPR036402	EF-Ts_dimer_sf	SUPERFAMILY	554	695

No CAZYmes available for this sequence

External Links

No external refs found!