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  5. Sobic.002G412300.2

Sobic.002G412300.2


Description : Pentatricopeptide repeat (PPR-like) superfamily protein


Gene families : OG_01_0017987 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0017987_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G412300.2
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G412300.2 No neighbors in network
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_262


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 171 205
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 416 450
IPR011990 TPR-like_helical_dom_sf Gene3D 303 373
IPR011990 TPR-like_helical_dom_sf Gene3D 166 234
IPR011990 TPR-like_helical_dom_sf Gene3D 235 302
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 241 275
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 66 100
IPR002885 Pentatricopeptide_rpt Pfam 89 144
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 381 415
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 206 240
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 346 380
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 276 310
IPR002885 Pentatricopeptide_rpt Pfam 306 338
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 101 135
IPR002885 Pentatricopeptide_rpt Pfam 345 393
IPR002885 Pentatricopeptide_rpt Pfam 171 219
IPR002885 Pentatricopeptide_rpt Pfam 241 289
IPR002885 Pentatricopeptide_rpt Pfam 415 462
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 311 345
IPR002885 Pentatricopeptide_rpt TIGRFAM 209 238
IPR002885 Pentatricopeptide_rpt TIGRFAM 313 342
IPR002885 Pentatricopeptide_rpt TIGRFAM 418 451
IPR002885 Pentatricopeptide_rpt TIGRFAM 278 311
IPR002885 Pentatricopeptide_rpt TIGRFAM 383 417
IPR002885 Pentatricopeptide_rpt TIGRFAM 139 171
IPR002885 Pentatricopeptide_rpt TIGRFAM 348 382
IPR002885 Pentatricopeptide_rpt TIGRFAM 244 277
IPR002885 Pentatricopeptide_rpt TIGRFAM 72 101
IPR002885 Pentatricopeptide_rpt TIGRFAM 173 207
IPR011990 TPR-like_helical_dom_sf Gene3D 374 475
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 136 170
IPR011990 TPR-like_helical_dom_sf Gene3D 64 165

No CAZYmes available for this sequence

No external refs found!