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Description : Pentatricopeptide repeat (PPR-like) superfamily protein
Gene families : OG_01_0010790 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0010790_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.002G423400.2 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.002G423400.2 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_218 | |
| Cluster | Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_134 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 267 | 301 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 234 | 264 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 166 | 194 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 271 | 298 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 162 | 196 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 366 | 438 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 337 | 371 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 74 | 213 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 513 | 547 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 621 | 653 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 304 | 338 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 165 | 194 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 445 | 475 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 375 | 408 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 585 | 619 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 409 | 443 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 234 | 268 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 515 | 549 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 480 | 506 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 551 | 584 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 270 | 303 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 545 | 575 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 368 | 399 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 548 | 582 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 407 | 441 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 583 | 617 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 252 | 365 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 439 | 529 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 530 | 669 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 302 | 336 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 372 | 406 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 478 | 512 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 618 | 652 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 232 | 266 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 301 | 350 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 406 | 456 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 582 | 629 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 478 | 524 |
No CAZYmes available for this sequence
| No external refs found! |