Sobic.003G003450.1

Description : chloroplast beta-amylase

Gene families : OG_01_0008613 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0008613_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G003450.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G003450.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_247
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_188

Type	GO Term	Name	Evidence	Source
BP	GO:0000272	polysaccharide catabolic process	ISM	GOs from InterProScan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
BP	GO:0005975	carbohydrate metabolic process	None	Extended
BP	GO:0005976	polysaccharide metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0016052	carbohydrate catabolic process	None	Extended
MF	GO:0016160	amylase activity	None	Extended
MF	GO:0016161	beta-amylase activity	ISM	GOs from InterProScan
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR029033	His_PPase_superfam	Gene3D	96	294
IPR013078	His_Pase_superF_clade-1	Pfam	99	285
IPR029033	His_PPase_superfam	SUPERFAMILY	96	295
IPR001554	Glyco_hydro_14	Pfam	296	628
IPR001554	Glyco_hydro_14	PRINTS	557	579
IPR001554	Glyco_hydro_14	PRINTS	486	502
IPR001554	Glyco_hydro_14	PRINTS	450	469
IPR001554	Glyco_hydro_14	PRINTS	372	394
IPR001554	Glyco_hydro_14	PRINTS	521	544
IPR001554	Glyco_hydro_14	PRINTS	503	514
IPR017853	Glycoside_hydrolase_SF	SUPERFAMILY	278	659
IPR001554	Glyco_hydro_14	PANTHER	77	666
IPR013078	His_Pase_superF_clade-1	CDD	97	286
IPR013078	His_Pase_superF_clade-1	SMART	97	251

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
GH14	412	668	2.2e-120	295	625

External Links

No external refs found!