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  5. Sobic.003G006500.1

Sobic.003G006500.1


Description : Transducin/WD40 repeat-like superfamily protein


Gene families : OG_01_0039804 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0039804_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G006500.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G006500.1 No neighbors in network
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_111


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR001680 WD40_rpt ProSiteProfiles 361 392
IPR045182 JINGUBANG-like PANTHER 2 532
IPR001680 WD40_rpt ProSiteProfiles 219 260
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 115 453
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 299 456
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 104 298
IPR001680 WD40_rpt ProSiteProfiles 261 292
IPR020472 G-protein_beta_WD-40_rep PRINTS 238 252
IPR020472 G-protein_beta_WD-40_rep PRINTS 380 394
IPR020472 G-protein_beta_WD-40_rep PRINTS 280 294
IPR001680 WD40_rpt SMART 106 143
IPR001680 WD40_rpt SMART 213 251
IPR001680 WD40_rpt SMART 254 293
IPR001680 WD40_rpt SMART 300 347
IPR001680 WD40_rpt SMART 406 452
IPR001680 WD40_rpt SMART 354 393
IPR001680 WD40_rpt Pfam 361 392
IPR001680 WD40_rpt Pfam 408 451
IPR001680 WD40_rpt Pfam 255 292

No CAZYmes available for this sequence

No external refs found!