Sobic.003G049000.1

Description : Zinc finger C-x8-C-x5-C-x3-H type family protein

Gene families : OG_01_0044397 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0044397_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G049000.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G049000.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_42
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_38

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	ISM	GOs from InterProScan
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR045877	ZFP36-like	PANTHER	12	265
IPR000571	Znf_CCCH	SMART	82	108
IPR000571	Znf_CCCH	SMART	148	174
IPR000571	Znf_CCCH	ProSiteProfiles	82	109
IPR000571	Znf_CCCH	Pfam	83	108
IPR000571	Znf_CCCH	Pfam	152	172
IPR036855	Znf_CCCH_sf	SUPERFAMILY	151	173
IPR036855	Znf_CCCH_sf	SUPERFAMILY	81	113
IPR000571	Znf_CCCH	ProSiteProfiles	152	175

No CAZYmes available for this sequence

External Links

No external refs found!