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Description : Pentatricopeptide repeat (PPR) superfamily protein
Gene families : OG_01_0012894 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012894_tree
Sequence : cds (download), rna (download), protein (download)
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Type | Description | Actions |
|---|---|---|
| Neighborhood | Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G051500.2 | |
| Neighborhood | Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G051500.2 | No neighbors in network |
| Cluster | Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_133 |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0005515 | protein binding | ISM | GOs from InterProScan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No Predicted GO terms available for this sequence |
| InterPro domains | Description | Source | Start | Stop |
|---|---|---|---|---|
| IPR002885 | Pentatricopeptide_rpt | Pfam | 462 | 520 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 334 | 368 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 509 | 543 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 369 | 403 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 58 | 225 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 230 | 346 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 404 | 438 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 337 | 365 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 304 | 330 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 372 | 401 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 348 | 458 |
| IPR011990 | TPR-like_helical_dom_sf | Gene3D | 459 | 565 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 474 | 508 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 439 | 473 |
| IPR002885 | Pentatricopeptide_rpt | Pfam | 404 | 451 |
| IPR002885 | Pentatricopeptide_rpt | ProSiteProfiles | 299 | 333 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 407 | 439 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 442 | 473 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 372 | 404 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 477 | 509 |
| IPR002885 | Pentatricopeptide_rpt | TIGRFAM | 337 | 368 |
No CAZYmes available for this sequence
| No external refs found! |