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  5. Sobic.003G059750.1

Sobic.003G059750.1


Description : WD40/YVTN repeat-like-containing domain;Bromodomain


Gene families : OG_01_0002327 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002327_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G059750.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G059750.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_62
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_116


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR019775 WD40_repeat_CS ProSitePatterns 601 615
IPR001680 WD40_rpt ProSiteProfiles 321 356
IPR001487 Bromodomain Pfam 1620 1669
IPR001680 WD40_rpt SMART 382 421
IPR001680 WD40_rpt SMART 230 269
IPR001680 WD40_rpt SMART 532 571
IPR001680 WD40_rpt SMART 433 500
IPR001680 WD40_rpt SMART 574 614
IPR001680 WD40_rpt SMART 272 311
IPR001680 WD40_rpt SMART 314 356
IPR001680 WD40_rpt ProSiteProfiles 389 421
IPR001680 WD40_rpt ProSiteProfiles 279 320
IPR001680 WD40_rpt ProSiteProfiles 237 278
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 212 389
IPR036427 Bromodomain-like_sf Gene3D 1582 1694
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 536 670
IPR036427 Bromodomain-like_sf SUPERFAMILY 1624 1691
IPR015943 WD40/YVTN_repeat-like_dom_sf Gene3D 390 526
IPR036322 WD40_repeat_dom_sf SUPERFAMILY 230 654
IPR001680 WD40_rpt Pfam 393 421
IPR001680 WD40_rpt Pfam 232 268
IPR001680 WD40_rpt Pfam 275 310
IPR001680 WD40_rpt Pfam 575 614
IPR001680 WD40_rpt Pfam 317 356

No CAZYmes available for this sequence

No external refs found!