Sobic.003G062300.1

Description : sequence-specific DNA binding transcription factors;zinc ion binding;sequence-specific DNA binding transcription factors

Gene families : OG_01_0003889 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003889_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G062300.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G062300.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_22
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_84

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005634	nucleus	ISM	GOs from InterProScan
MF	GO:0008270	zinc ion binding	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043227	membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043231	intracellular membrane-bounded organelle	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR034078	NFX1_fam	PANTHER	16	901
IPR001841	Znf_RING	ProSiteProfiles	109	162
IPR000967	Znf_NFX1	SMART	734	755
IPR000967	Znf_NFX1	SMART	619	658
IPR000967	Znf_NFX1	SMART	671	689
IPR000967	Znf_NFX1	SMART	424	443
IPR000967	Znf_NFX1	SMART	211	229
IPR000967	Znf_NFX1	SMART	371	391
IPR000967	Znf_NFX1	SMART	317	336
IPR000967	Znf_NFX1	SMART	514	529
IPR000967	Znf_NFX1	SMART	264	283
IPR000967	Znf_NFX1	SMART	537	582
IPR000967	Znf_NFX1	SMART	451	470
IPR000967	Znf_NFX1	Pfam	424	442
IPR000967	Znf_NFX1	Pfam	264	281
IPR000967	Znf_NFX1	Pfam	451	469
IPR000967	Znf_NFX1	Pfam	212	228
IPR000967	Znf_NFX1	Pfam	518	528
IPR000967	Znf_NFX1	Pfam	317	335
IPR000967	Znf_NFX1	Pfam	619	629
IPR000967	Znf_NFX1	Pfam	736	753
IPR000967	Znf_NFX1	Pfam	671	688
IPR000967	Znf_NFX1	Pfam	371	390
IPR000967	Znf_NFX1	Pfam	537	546

No CAZYmes available for this sequence

External Links

No external refs found!