Sobic.003G111900.1

Description : laccase 7

Gene families : OG_01_0007444 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007444_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G111900.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G111900.1	No neighbors in network
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_69

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005507	copper ion binding	ISM	GOs from InterProScan
MF	GO:0016491	oxidoreductase activity	ISM	GOs from InterProScan
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	None	Extended
MF	GO:0046914	transition metal ion binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR034289	CuRO_3_LCC	CDD	432	576
IPR008972	Cupredoxin	Gene3D	161	350
IPR011707	Cu-oxidase-like_N	Pfam	40	151
IPR008972	Cupredoxin	Gene3D	386	598
IPR008972	Cupredoxin	SUPERFAMILY	359	595
IPR008972	Cupredoxin	SUPERFAMILY	30	173
IPR011706	Cu-oxidase_C	Pfam	437	575
IPR008972	Cupredoxin	Gene3D	17	149
IPR001117	Cu-oxidase_2nd	Pfam	164	294
IPR033138	Cu_oxidase_CS	ProSitePatterns	551	571
IPR034285	CuRO_2_LCC	CDD	164	314
IPR002355	Cu_oxidase_Cu_BS	ProSitePatterns	556	567
IPR045087	Cu-oxidase_fam	PANTHER	4	595
IPR008972	Cupredoxin	SUPERFAMILY	160	354
IPR034288	CuRO_1_LCC	CDD	33	149

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
AA1	358	599	1e-116	50	568

External Links

No external refs found!