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  5. Sobic.003G116600.1

Sobic.003G116600.1


Description : Syntaxin/t-SNARE family protein


Gene families : OG_01_0004418 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004418_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G116600.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G116600.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_245
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_168


Type GO Term Name Evidence Source
MF GO:0005484 SNAP receptor activity ISM GOs from InterProScan
BP GO:0006886 intracellular protein transport ISM GOs from InterProScan
CC GO:0016020 membrane ISM GOs from InterProScan
BP GO:0016192 vesicle-mediated transport ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR000727 T_SNARE_dom ProSiteProfiles 187 249
IPR000727 T_SNARE_dom SMART 182 249
IPR010989 SNARE SUPERFAMILY 33 242
IPR006012 Syntaxin/epimorphin_CS ProSitePatterns 193 232
IPR000727 T_SNARE_dom Pfam 224 275
IPR006011 Syntaxin_N Pfam 37 136
IPR045242 Syntaxin PANTHER 32 279
IPR006011 Syntaxin_N CDD 38 173
IPR006011 Syntaxin_N SMART 21 134

No CAZYmes available for this sequence

No external refs found!