Sobic.003G117200.1

Description : zinc finger (CCCH type) helicase family protein

Gene families : OG_01_0007704 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0007704_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G117200.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G117200.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_190
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_46

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0043169	cation binding	None	Extended
MF	GO:0046872	metal ion binding	ISM	GOs from InterProScan
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR011545	DEAD/DEAH_box_helicase_dom	Pfam	36	189
IPR000571	Znf_CCCH	Pfam	733	756
IPR014001	Helicase_ATP-bd	ProSiteProfiles	37	201
IPR000571	Znf_CCCH	SMART	759	785
IPR000571	Znf_CCCH	SMART	731	757
IPR001650	Helicase_C	Pfam	264	388
IPR001650	Helicase_C	ProSiteProfiles	259	437
IPR000571	Znf_CCCH	ProSiteProfiles	731	756
IPR001650	Helicase_C	SMART	286	389
IPR000571	Znf_CCCH	ProSiteProfiles	758	786
IPR014001	Helicase_ATP-bd	SMART	19	217
IPR027417	P-loop_NTPase	Gene3D	246	408
IPR027417	P-loop_NTPase	SUPERFAMILY	43	398
IPR027417	P-loop_NTPase	Gene3D	8	208

No CAZYmes available for this sequence

External Links

No external refs found!