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  5. Sobic.003G144000.1

Sobic.003G144000.1


Description : Tetratricopeptide repeat (TPR)-like superfamily protein


Gene families : OG_01_0004806 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0004806_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G144000.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G144000.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_307
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_40


Type GO Term Name Evidence Source
MF GO:0005515 protein binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 376 410
IPR002885 Pentatricopeptide_rpt Pfam 168 197
IPR002885 Pentatricopeptide_rpt Pfam 273 298
IPR002885 Pentatricopeptide_rpt Pfam 381 408
IPR002885 Pentatricopeptide_rpt Pfam 205 247
IPR002885 Pentatricopeptide_rpt TIGRFAM 381 411
IPR002885 Pentatricopeptide_rpt TIGRFAM 168 197
IPR002885 Pentatricopeptide_rpt TIGRFAM 238 269
IPR002885 Pentatricopeptide_rpt TIGRFAM 205 236
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 165 199
IPR011990 TPR-like_helical_dom_sf Gene3D 306 514
IPR011990 TPR-like_helical_dom_sf Gene3D 203 305
IPR002885 Pentatricopeptide_rpt ProSiteProfiles 235 269
IPR011990 TPR-like_helical_dom_sf Gene3D 75 202

No CAZYmes available for this sequence

No external refs found!