Sobic.003G146600.1

Description : pumilio 23

Gene families : OG_01_0003787 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003787_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G146600.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G146600.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_302
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_134

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR016024	ARM-type_fold	SUPERFAMILY	136	352
IPR001313	Pumilio_RNA-bd_rpt	ProSiteProfiles	411	447
IPR040000	NOP9	PANTHER	29	780
IPR001313	Pumilio_RNA-bd_rpt	Pfam	558	576
IPR001313	Pumilio_RNA-bd_rpt	Pfam	595	629
IPR001313	Pumilio_RNA-bd_rpt	Pfam	418	449
IPR016024	ARM-type_fold	SUPERFAMILY	312	667
IPR011989	ARM-like	Gene3D	524	700
IPR001313	Pumilio_RNA-bd_rpt	SMART	554	590
IPR001313	Pumilio_RNA-bd_rpt	SMART	189	223
IPR001313	Pumilio_RNA-bd_rpt	SMART	591	626
IPR001313	Pumilio_RNA-bd_rpt	SMART	319	353
IPR001313	Pumilio_RNA-bd_rpt	SMART	411	447
IPR001313	Pumilio_RNA-bd_rpt	SMART	153	188
IPR011989	ARM-like	Gene3D	104	485
IPR001313	Pumilio_RNA-bd_rpt	ProSiteProfiles	591	626

No CAZYmes available for this sequence

External Links

No external refs found!