Sobic.003G150800.1

Description : Albino or Glassy Yellow 1

Gene families : OG_01_0003428 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0003428_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G150800.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G150800.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_68
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_540

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	ISM	GOs from InterProScan
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006605	protein targeting	ISM	GOs from InterProScan
BP	GO:0006810	transport	None	Extended
BP	GO:0006886	intracellular protein transport	ISM	GOs from InterProScan
BP	GO:0008104	protein localization	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0015031	protein transport	None	Extended
CC	GO:0016020	membrane	ISM	GOs from InterProScan
BP	GO:0017038	protein import	ISM	GOs from InterProScan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
BP	GO:0033036	macromolecule localization	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
BP	GO:0045184	establishment of protein localization	None	Extended
BP	GO:0046907	intracellular transport	None	Extended
BP	GO:0051179	localization	None	Extended
BP	GO:0051234	establishment of localization	None	Extended
BP	GO:0051641	cellular localization	None	Extended
BP	GO:0051649	establishment of localization in cell	None	Extended
BP	GO:0070727	cellular macromolecule localization	None	Extended
BP	GO:0071702	organic substance transport	None	Extended
BP	GO:0071705	nitrogen compound transport	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR036670	SecA_X-link_sf	SUPERFAMILY	299	418
IPR011116	SecA_Wing/Scaffold	Pfam	758	972
IPR027417	P-loop_NTPase	SUPERFAMILY	467	755
IPR011130	SecA_preprotein_X-link_dom	Pfam	302	408
IPR027417	P-loop_NTPase	Gene3D	467	760
IPR044722	SecA_SF2_C	CDD	470	731
IPR011130	SecA_preprotein_X-link_dom	SMART	297	408
IPR011115	SecA_DEAD	Pfam	84	452
IPR027417	P-loop_NTPase	Gene3D	90	466
IPR020937	SecA_CS	ProSitePatterns	552	567
IPR000185	SecA	Hamap	70	976
IPR027417	P-loop_NTPase	SUPERFAMILY	85	465
IPR000185	SecA	PANTHER	64	993
IPR000185	SecA	TIGRFAM	97	962
IPR011115	SecA_DEAD	SMART	71	452
IPR000185	SecA	PRINTS	389	411
IPR000185	SecA	PRINTS	132	156
IPR000185	SecA	PRINTS	186	196
IPR000185	SecA	PRINTS	239	259
IPR000185	SecA	PRINTS	463	476
IPR000185	SecA	PRINTS	426	443
IPR000185	SecA	PRINTS	170	184
IPR036266	SecA_Wing/Scaffold_sf	SUPERFAMILY	761	984
IPR014018	SecA_motor_DEAD	ProSiteProfiles	72	761
IPR014001	Helicase_ATP-bd	ProSiteProfiles	158	316

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.003G150800.1

Expression Profile

Co-expression Networks

Functional Annotation