Sobic.003G153100.1

Description : Pectin lyase-like superfamily protein

Gene families : OG_01_0005121 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005121_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G153100.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G153100.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_156
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_189

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004650	polygalacturonase activity	ISM	GOs from InterProScan
BP	GO:0005975	carbohydrate metabolic process	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR000743	Glyco_hydro_28	ProSitePatterns	506	519
IPR000743	Glyco_hydro_28	Pfam	315	637
IPR011050	Pectin_lyase_fold/virulence	SUPERFAMILY	275	681
IPR012334	Pectin_lyas_fold	Gene3D	271	684
IPR006626	PbH1	SMART	558	579
IPR006626	PbH1	SMART	476	497
IPR006626	PbH1	SMART	499	519
IPR006626	PbH1	SMART	529	550
IPR006626	PbH1	SMART	426	475

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
GH28	325	693	3.8e-90	310	640

External Links

No external refs found!