Sobic.003G156000.1

Description : homolog of carrot EP3-3 chitinase

Gene families : OG_01_0002667 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002667_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G156000.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G156000.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_93
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_56

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004553	hydrolase activity, hydrolyzing O-glycosyl compounds	None	Extended
MF	GO:0004568	chitinase activity	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
BP	GO:0005975	carbohydrate metabolic process	ISM	GOs from InterProScan
BP	GO:0006022	aminoglycan metabolic process	None	Extended
BP	GO:0006026	aminoglycan catabolic process	None	Extended
BP	GO:0006030	chitin metabolic process	None	Extended
BP	GO:0006032	chitin catabolic process	ISM	GOs from InterProScan
BP	GO:0006040	amino sugar metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
MF	GO:0008061	chitin binding	ISM	GOs from InterProScan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016798	hydrolase activity, acting on glycosyl bonds	None	Extended
BP	GO:0016998	cell wall macromolecule catabolic process	ISM	GOs from InterProScan
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044036	cell wall macromolecule metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046348	amino sugar catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
BP	GO:1901071	glucosamine-containing compound metabolic process	None	Extended
BP	GO:1901072	glucosamine-containing compound catabolic process	None	Extended
BP	GO:1901135	carbohydrate derivative metabolic process	None	Extended
BP	GO:1901136	carbohydrate derivative catabolic process	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901565	organonitrogen compound catabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR001002	Chitin-bd_1	Pfam	33	66
IPR001002	Chitin-bd_1	ProSiteProfiles	33	68
IPR001002	Chitin-bd_1	PRINTS	51	58
IPR001002	Chitin-bd_1	PRINTS	44	51
IPR001002	Chitin-bd_1	PRINTS	36	44
IPR036861	Endochitinase-like_sf	SUPERFAMILY	32	66
IPR001002	Chitin-bd_1	SMART	35	66
IPR036861	Endochitinase-like_sf	Gene3D	28	68
IPR000726	Glyco_hydro_19_cat	ProSitePatterns	99	121
IPR000726	Glyco_hydro_19_cat	Pfam	92	225
IPR000726	Glyco_hydro_19_cat	ProSitePatterns	213	223
IPR016283	Glyco_hydro_19	PIRSF	8	279
IPR023346	Lysozyme-like_dom_sf	SUPERFAMILY	85	279
IPR018371	Chitin-binding_1_CS	ProSitePatterns	38	57

HMM Family	HMM Length	Query Length	e-Value	Query Start	Query End
CBM18	38	280	1.4e-10	32	66
GH19	231	280	1.7e-66	83	279

External Links

No external refs found!

Sobic.003G156000.1

Expression Profile

Co-expression Networks

Functional Annotation