Sobic.003G164300.1

Description : cullin 1

Gene families : OG_01_0000514 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0000514_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G164300.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G164300.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_1
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_26

Type	GO Term	Name	Evidence	Source
CC	GO:0000151	ubiquitin ligase complex	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006508	proteolysis	None	Extended
BP	GO:0006511	ubiquitin-dependent protein catabolic process	ISM	GOs from InterProScan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009056	catabolic process	None	Extended
BP	GO:0009057	macromolecule catabolic process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019899	enzyme binding	None	Extended
BP	GO:0019941	modification-dependent protein catabolic process	None	Extended
CC	GO:0031461	cullin-RING ubiquitin ligase complex	ISM	GOs from InterProScan
MF	GO:0031625	ubiquitin protein ligase binding	ISM	GOs from InterProScan
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043632	modification-dependent macromolecule catabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
MF	GO:0044389	ubiquitin-like protein ligase binding	None	Extended
BP	GO:0051603	proteolysis involved in protein catabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0140535	intracellular protein-containing complex	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901575	organic substance catabolic process	None	Extended
CC	GO:1902494	catalytic complex	None	Extended
CC	GO:1990234	transferase complex	None	Extended

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Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR019559	Cullin_neddylation_domain	SMART	672	739
IPR001373	Cullin_N	Pfam	38	648
IPR016157	Cullin_CS	ProSitePatterns	718	745
IPR036317	Cullin_homology_sf	SUPERFAMILY	388	658
IPR036390	WH_DNA-bd_sf	SUPERFAMILY	661	745
IPR016159	Cullin_repeat-like_dom_sf	SUPERFAMILY	10	384
IPR019559	Cullin_neddylation_domain	Pfam	675	736
IPR016158	Cullin_homology	ProSiteProfiles	389	620
IPR016158	Cullin_homology	SMART	420	570
IPR045093	Cullin	PANTHER	3	744
IPR036388	WH-like_DNA-bd_sf	Gene3D	662	745

No CAZYmes available for this sequence

External Links

No external refs found!

Sobic.003G164300.1

Expression Profile

Co-expression Networks

Functional Annotation