1. Home
  2. Species
  3. Sorghum bicolor
  4. Sequence
  5. Sobic.003G173800.1

Sobic.003G173800.1


Description : Pectin lyase-like superfamily protein


Gene families : OG_01_0018277 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0018277_tree

Sequence : cds (download), rna (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G173800.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G173800.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_21
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_49


Type GO Term Name Evidence Source
MF GO:0004650 polygalacturonase activity ISM GOs from InterProScan
BP GO:0005975 carbohydrate metabolic process ISM GOs from InterProScan
Toggle parental
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR011050 Pectin_lyase_fold/virulence SUPERFAMILY 42 412
IPR006626 PbH1 SMART 219 240
IPR006626 PbH1 SMART 192 218
IPR006626 PbH1 SMART 272 293
IPR006626 PbH1 SMART 303 324
IPR006626 PbH1 SMART 339 379
IPR006626 PbH1 SMART 241 262
IPR012334 Pectin_lyas_fold Gene3D 28 410
IPR000743 Glyco_hydro_28 Pfam 73 399
HMM Family HMM Length Query Length e-Value Query Start Query End
GH28 325 414 2e-88 70 401
No external refs found!