Sobic.003G182501.1

Description : Tetratricopeptide repeat (TPR)-like superfamily protein

Gene families : OG_01_0012722 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0012722_tree

Sequence : cds (download), rna (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G182501.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G182501.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_146
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_71

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0005515	protein binding	ISM	GOs from InterProScan
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009451	RNA modification	ISM	GOs from InterProScan
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	309	343
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	177	207
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	107	141
IPR011990	TPR-like_helical_dom_sf	Gene3D	7	161
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	208	242
IPR002885	Pentatricopeptide_rpt	TIGRFAM	311	337
IPR002885	Pentatricopeptide_rpt	TIGRFAM	180	209
IPR002885	Pentatricopeptide_rpt	TIGRFAM	513	546
IPR002885	Pentatricopeptide_rpt	TIGRFAM	210	244
IPR002885	Pentatricopeptide_rpt	TIGRFAM	413	446
IPR002885	Pentatricopeptide_rpt	TIGRFAM	109	142
IPR045215	PPR_prot_At1g15510	PANTHER	1	92
IPR045215	PPR_prot_At1g15510	PANTHER	86	731
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	410	444
IPR011990	TPR-like_helical_dom_sf	Gene3D	261	360
IPR011990	TPR-like_helical_dom_sf	Gene3D	361	468
IPR002885	Pentatricopeptide_rpt	Pfam	510	558
IPR002885	Pentatricopeptide_rpt	Pfam	208	254
IPR002885	Pentatricopeptide_rpt	Pfam	410	453
IPR002885	Pentatricopeptide_rpt	Pfam	309	352
IPR011990	TPR-like_helical_dom_sf	Gene3D	162	260
IPR011990	TPR-like_helical_dom_sf	Gene3D	522	704
IPR002885	Pentatricopeptide_rpt	ProSiteProfiles	511	545
IPR002885	Pentatricopeptide_rpt	Pfam	485	505
IPR002885	Pentatricopeptide_rpt	Pfam	109	134
IPR002885	Pentatricopeptide_rpt	Pfam	384	409

No CAZYmes available for this sequence

External Links

No external refs found!