Sobic.003G188300.1

Description : RING/FYVE/PHD-type zinc finger family protein

Gene families : OG_01_0005634 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0005634_tree

Sequence : cds (download), rna (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G188300.1
Neighborhood	Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G188300.1
Cluster	Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_302
Cluster	Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_201

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	ISM	GOs from InterProScan
MF	GO:0005488	binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
No Predicted GO terms available for this sequence

InterPro domains	Description	Source	Start	Stop
IPR019787	Znf_PHD-finger	Pfam	1101	1147
IPR003656	Znf_BED	ProSiteProfiles	85	141
IPR013083	Znf_RING/FYVE/PHD	Gene3D	1047	1152
IPR013083	Znf_RING/FYVE/PHD	Gene3D	920	992
IPR003656	Znf_BED	Pfam	91	135
IPR019787	Znf_PHD-finger	ProSiteProfiles	1098	1148
IPR001841	Znf_RING	ProSiteProfiles	1047	1099
IPR011011	Znf_FYVE_PHD	SUPERFAMILY	1100	1150
IPR019787	Znf_PHD-finger	ProSiteProfiles	1044	1102
IPR003656	Znf_BED	ProSiteProfiles	221	272
IPR001965	Znf_PHD	SMART	1046	1100
IPR001965	Znf_PHD	SMART	929	975
IPR001965	Znf_PHD	SMART	1101	1146
IPR011011	Znf_FYVE_PHD	SUPERFAMILY	923	981

No CAZYmes available for this sequence

External Links

No external refs found!