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  5. Sobic.003G194800.1

Sobic.003G194800.1


Description : Calcium-binding EF hand family protein


Gene families : OG_01_0002248 (OrthoFinder Gene Families v0.3) Phylogenetic Tree(s): OG0002248_tree

Sequence : cds (download), rna (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood Sorghum bicolor coexpression network - v0.2 (X-meeting 2023): Sobic.003G194800.1
Neighborhood Sorghum bicolor coexpression nextwork - Leiboff and Hake 2019: Sobic.003G194800.1
Cluster Sorghum bicolor HCCA coexpression clusters - v0.2 (X-meeting 2023): Cluster_203
Cluster Sorghum bicolor HCCA coexpression clusters - Leiboff and Hake (2019): Cluster_120


Type GO Term Name Evidence Source
MF GO:0005509 calcium ion binding ISM GOs from InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Source Start Stop
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 228 240
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 267 279
IPR002048 EF_hand_dom SMART 179 207
IPR002048 EF_hand_dom SMART 344 372
IPR002048 EF_hand_dom SMART 258 286
IPR002048 EF_hand_dom SMART 305 333
IPR002048 EF_hand_dom SMART 219 247
IPR002048 EF_hand_dom Pfam 223 243
IPR002048 EF_hand_dom Pfam 267 278
IPR002048 EF_hand_dom ProSiteProfiles 301 336
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 314 326
IPR011992 EF-hand-dom_pair SUPERFAMILY 221 380
IPR002048 EF_hand_dom ProSiteProfiles 267 289
IPR002048 EF_hand_dom ProSiteProfiles 340 375
IPR011992 EF-hand-dom_pair SUPERFAMILY 140 248
IPR002048 EF_hand_dom Pfam 305 367
IPR018247 EF_Hand_1_Ca_BS ProSitePatterns 353 365
IPR002048 EF_hand_dom ProSiteProfiles 221 250

No CAZYmes available for this sequence

No external refs found!